cladeIdentity: Identify branches (including tips) descended from a node...
In ghthomas/motmot: Models of Trait Macroevolution on Trees
Description
Usage
Arguments
Details
Value
Author(s)
View source: R/cladeIdentity.R
Description
Internal function to get presence absence of descendent branches from a vector of node numbers. The descendents include the branch leading to the focal node (i.e. node defines the stem group no crown group)
Usage
1
cladeIdentity(phy, nodeIDs, cladeMembersObj)
Arguments
phy
An object of class "phylo" (see ape package).
nodeIDs
Vector of node numbers (positive integers).
cladeMembersObj
Matrix of clade membership
Details
The function returns a matrix of unique presences given the selected node. If the selected nodes are nested then presences are only recorded for the least inclusive node.
Value
matrix
Matrix of unique presences for each node id
Author(s)
Gavin Thomas
ghthomas/motmot documentation built on July 31, 2018, 12:11 a.m.
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Description Usage Arguments Details Value Author(s)
View source: R/cladeIdentity.R
Description
Internal function to get presence absence of descendent branches from a vector of node numbers. The descendents include the branch leading to the focal node (i.e. node defines the stem group no crown group)
Usage
1 | cladeIdentity(phy, nodeIDs, cladeMembersObj)
|
Arguments
phy |
An object of class "phylo" (see ape package). |
nodeIDs |
Vector of node numbers (positive integers). |
cladeMembersObj |
Matrix of clade membership |
Details
The function returns a matrix of unique presences given the selected node. If the selected nodes are nested then presences are only recorded for the least inclusive node.
Value
matrix |
Matrix of unique presences for each node id |
Author(s)
Gavin Thomas
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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