fairProportions: Calculate fair proportions phylogenetic diversity metric

In ghthomas/motmot: Models of Trait Macroevolution on Trees

Description

Calculate fair proportions phylogenetic diversity metric

Usage

fairProportions(phy, nodeCount=FALSE)

Arguments

phy	An object of class "phylo" (see ape package).
nodeCount	Logical - should root to tip node counts be returned (default is FALSE)

Value

Returns a matrix of fair proportion for all tips in phylogeny and node counts if selected.

Author(s)

Gavin Thomas

References

Redding, D.W. and Mooers, A.O. (2006). Incorporating evolutionary measures into conservation prioritisation. Conservation Biology, 20, 1670-1678.

Isaac, N.J.B., Turvey, S.T., Collen, B., Waterman, C. and Baillie, J.E.M. (2007). Mammals on the EDGE: conservation priorities based on threat and phylogeny. PLoS ONE, 2, e296.

Examples

data(anolis.tree)

fp <- fairProportions(anolis.tree)
fpNodes <- fairProportions(anolis.tree, nodeCount=TRUE)

ghthomas/motmot documentation built on July 31, 2018, 12:11 a.m.