API for gillislab/MetaMarkers
Extract robust markers from multiple datasets
| Global functions | |
|---|---|
| assign_cells | Man page Source code |
| assign_cells_ | Source code |
| auroc_p_value | Source code |
| average_expression | Source code |
| colVars_sparse | Source code |
| compute_aurocs | Man page Source code |
| compute_marker_enrichment | Man page Source code |
| compute_markers | Man page Source code |
| compute_markers_ | Source code |
| compute_markers_blockwise | Source code |
| compute_tie_correction | Source code |
| compute_umap | Man page |
| convert_to_cpm | Man page Source code |
| design_matrix | Man page Source code |
| export_markers | Man page Source code |
| export_markers_by_cell_type | Man page Source code |
| export_markers_by_group | Man page Source code |
| export_markers_for_cell_type | Man page Source code |
| export_meta_markers | Man page Source code |
| export_meta_markers_by_cell_type | Man page Source code |
| find_common_genes | Source code |
| get_cell_type | Man page Source code |
| get_group | Man page Source code |
| get_pareto_markers | Man page Source code |
| gmean | Source code |
| is_pareto_front | Source code |
| make_meta_markers | Man page Source code |
| marker_list_to_matrix | Man page Source code |
| marker_table_to_matrix | Man page Source code |
| my_col_sums | Source code |
| my_fdr | Source code |
| plot_assignments | Man page |
| plot_marker_expression | Man page Source code |
| plot_marker_scores | Man page |
| plot_pareto_markers | Man page Source code |
| plot_pareto_summary | Man page Source code |
| rank_sparse | Source code |
| rank_zero | Source code |
| read_markers | Man page Source code |
| read_meta_markers | Man page Source code |
| remove_duplicated_genes | Man page Source code |
| score_cells | Man page Source code |
| summarize_auroc | Man page Source code |
| summarize_fold_change | Man page Source code |
| summarize_precision_recall | Man page Source code |
| tidy_stat | Source code |
| write_cell_type_header | Source code |
| write_header | Source code |
| write_meta_header | Source code |
