plot_marker_scores: Plot markers scores in UMAP space (one facet per marker set).

Description Usage Arguments Value

Description

Plot markers scores in UMAP space (one facet per marker set).

Usage

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plot_marker_scores(
  scores,
  umap_coordinates,
  normalize_scores = FALSE,
  point_size = 1,
  rasterize_umap = FALSE
)

Arguments

scores

A marker score matrix as returned by score_cells or compute_marker_enrichment.

umap_coordinates

A (cell x 2) data.frame containing UMAP coordinates, where the ordering of cells is the same as in the score matrix

normalize_scores

Boolean. If TRUE, marker scores are renormalized between 0 and 1 for all marker sets to obtain similar color ranges across facets.

point_size

Numeric value indicating the dot size.

rasterize_umap

Boolean. If TRUE, the UMAP part of the figure is rasterized. This is particularly useful for large datasets.

Value

A ggplot2 object.


gillislab/MetaMarkers documentation built on April 24, 2021, 9:25 p.m.