marker_list_to_matrix: Convert marker list to gene x cell type matrix
In gillislab/MetaMarkers: Extract robust markers from multiple datasets
Description
Usage
Arguments
Value
Description
Convert marker list to gene x cell type matrix
Usage
1
marker_list_to_matrix(marker_list, known_genes, weighted = TRUE)
Arguments
marker_list
A named list (where names
are cell types and values are genes).
known_genes
List of genes to include in the matrix, may contain genes
that are absent from the marker lists, or omit genes that are present.
weighted
Boolean. If TRUE, all coefficients in the matrix are renormalized
by marker set size, otherwise all coefficients are 1.
Value
A gene x cell type matrix containing marker sets.
gillislab/MetaMarkers documentation built on April 24, 2021, 9:25 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Convert marker list to gene x cell type matrix
Usage
1 | marker_list_to_matrix(marker_list, known_genes, weighted = TRUE)
|
Arguments
marker_list |
A named list (where names are cell types and values are genes). |
known_genes |
List of genes to include in the matrix, may contain genes that are absent from the marker lists, or omit genes that are present. |
weighted |
Boolean. If TRUE, all coefficients in the matrix are renormalized by marker set size, otherwise all coefficients are 1. |
Value
A gene x cell type matrix containing marker sets.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.