export_meta_markers: Export meta-analytic markers to file (including header with...

In gillislab/MetaMarkers: Extract robust markers from multiple datasets

Description

Export meta-analytic markers to file (including header with time stamp).

Usage

export_meta_markers(
  meta_markers,
  filename,
  dataset_names,
  order_by = "auroc",
  fdr_threshold = 0.05,
  fc_threshold = 4,
  detection_threshold = 0,
  gzip = TRUE
)

Arguments

meta_markers	Meta-marker table obtained with make_meta_marker.
filename	File where to write meta-marker table.
dataset_names	Names of datasets used to compute meta-markers.
order_by	Secondary statistic by which meta-markers have been ranked.
fdr_threshold	FDR threshold used to identify Differentially Expressed (DE) genes.
fc_threshold	Fold change threshold used to identify DE genes.
detection_threshold	Detection rate threshold used to identify DE genes.
gzip	Boolean. Should output file be zipped to spare memory?

gillislab/MetaMarkers documentation built on April 24, 2021, 9:25 p.m.