This visualization displays markers meeting minimal threshold conditions in the (fold change of detection, AUROC) space. The best markers (Pareto front) are highlighted and labeled.
1 2 3 4 5 6 7 8 9 | plot_pareto_markers(
meta_markers,
cell_type_name,
min_recurrence = 1,
min_auroc = 0.5,
min_fc = 0,
fc_threshold = 3,
auroc_threshold = 0.8
)
|
meta_markers |
Meta-marker table obtained with |
cell_type_name |
Name of cell type to be plotted (must be contained in meta-markers). |
min_recurrence |
Recurrence threshold for a marker to be plotted (# of datasets where marker was DE) |
min_auroc |
AUROC threshold for a marker to be plotted. |
min_fc |
Fold change of detection threshold for a marker to be plotted. |
fc_threshold |
Threshold at which to draw a dashed line on the AUROC axis (set to NULL to skip). |
auroc_threshold |
Threshold at which to draw a dashed line on the fold change axis (set to NULL to skip). |
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