result-methods: Method to Extract Result Slots

In girke-lab/signatureSearch: Environment for Gene Expression Searching Combined with Functional Enrichment Analysis

Method to Extract Result Slots

Description

Method extracts tibbles from result slots of feaResult and gessResult objects. They are generated by the GESS and FEA functions defined by signatureSearch, respectively.

Usage

result(x)

## S4 method for signature 'feaResult'
result(x)

## S4 method for signature 'gessResult'
result(x)

Arguments

x	gessResult or feaResult object

Value

tibble

Examples

fr <- feaResult(result=dplyr::tibble(id=letters[seq_len(10)], 
                                     val=seq_len(10)),
                organism="human", ontology="MF", drugs=c("d1", "d2"), 
                targets=c("t1","t2"))
result(fr)
gr <- gessResult(result=dplyr::tibble(pert=letters[seq_len(10)], 
                               val=seq_len(10)), 
                 query=list(up=c("g1","g2"), down=c("g3","g4")),
                 gess_method="LINCS", refdb="path/to/lincs/db")
result(gr)

girke-lab/signatureSearch documentation built on Feb. 21, 2024, 8:32 a.m.