set_readable: Set Readable

In girke-lab/signatureSearch: Environment for Gene Expression Searching Combined with Functional Enrichment Analysis

Set Readable

Description

Mapping 'itemID' column in the FEA enrichment result table from Entrez ID to gene Symbol

Usage

set_readable(
  tb,
  OrgDb = "org.Hs.eg.db",
  keyType = "ENTREZID",
  geneCol = "itemID"
)

Arguments

tb	tibble object, enrichment result table
OrgDb	character(1), 'org.Hs.eg.db' for human
keyType	character(1), keyType of gene
geneCol	character(1), name of the column in 'tb' containing gene Entrez ids separated by '/' to be converted to gene Symbol

Value

tibble Object

Examples

data(drugs10)
res <- tsea_dup_hyperG(drugs=drugs10, type="Reactome", pvalueCutoff=1, 
                       qvalueCutoff=1)
res_tb <- set_readable(result(res))

girke-lab/signatureSearch documentation built on Feb. 21, 2024, 8:32 a.m.