gladex/COPAR: ChIP-seq Optimal Peak AnalyzeR
Version 1.0

The package aims to detect the optimal peak number candidate with statistically meaningful False Discovery Rate (FDR, e.g. 0.05) from aligned BED-format ChIP-seq data. Secondly, the package provides functions to retrieve signal patterns from the detect optimal peak count candidate. Thus it provides a quantitative measure for genomic feature extraction and comparison.

Getting started

Package details

AuthorBinhua Tang
MaintainerBinhua Tang <[email protected]>
LicenseGPL version 2 or newer
Version1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("gladex/COPAR")
gladex/COPAR documentation built on May 14, 2017, 12:09 p.m.