COPAR-package: ChIP-seq Optimal Peak AnalyzeR

In gladex/COPAR: ChIP-seq Optimal Peak AnalyzeR

Description

COPAR is designed for ChIP-seq optimal peak analysis. It takes the BED-formatted ChIP-seq data as the input, then it gives the optimal peak number candidate subject to statistically meaninful FDR. Secondly, the package provides functions to retrieve signal patterns from the detect optimal peak count candidate. Thus it provides a quantitative measure for genomic feature extraction and comparison.

Details

COPAR is designed for ChIP-seq Optimal Peak Analysis. This package was not yet installed at build time.
Index: This package was not yet installed at build time.

Author(s)

Author: Binhua Tang ([e-mail])

References

1. Tang B, Hsu H-K, Hsu P-Y, Bonneville R, Chen S-S, Huang TH-M, et al. Hierarchical modularity in ER¦Á transcriptional network is associated with distinct functions and implicates clinical outcomes. NPG Scientific Reports. 2012;2.

See Also

Dependencies: signal, fields, ggplot2.

Examples

library(COPAR)
## check the help docs.
?COPAR

## run sigProcess
sigProcess(x, inpName = "SRR015350_COPAR")

gladex/COPAR documentation built on Sept. 12, 2021, 1:07 p.m.