copar.optiPN: Optimal Peak Count Candidate and Corresponding FDR Finder.

In gladex/COPAR: ChIP-seq Optimal Peak AnalyzeR

Description

copar.optiPN is the package function to find the optimal peak count candiate and corresponding statistically meaningful FDR (e.g. <= 0.05).

Usage

copar.optiPN(PN = BS.PN,
            FDR = BS.FDR,
            thres_fdr = 5)

Arguments

PN	Peak number list.
FDR	The corresponding FDR list.
thres_fdr	The threshold FDR (in percentage), e.g. 5 for five percent of FDR.

Author(s)

Binhua Tang <[e-mail]>

References

1. Tang B, Hsu H-K, Hsu P-Y, Bonneville R, Chen S-S, Huang TH-M, et al. Hierarchical modularity in ER¦Á transcriptional network is associated with distinct functions and implicates clinical outcomes. NPG Scientific Reports. 2012;2.

Examples

library(COPAR)
## check the help docs.
?copar.optiPN
## run copar.optiPN
copar.optiPN(PN = BS.PN,
             FDR = BS.FDR,
             thres_fdr = 5)

gladex/COPAR documentation built on Sept. 12, 2021, 1:07 p.m.