copar.SigPattern: Peak Count Candidate Signal Pattern Analysis.

Description Usage Arguments Author(s) References Examples

Description

This package function will analyze the signal pattern of the detected peak count candidate list. Together it will generate a heatmap plot (TIFF format) for the randomized sequence of the detected peak count candiate list.

Usage

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copar.SigPattern(inpFile = "SRR015350_copa.rda",
                plotSigPattern = T)

Arguments

inpFile

The input data file, e.g. inpFile = "SRR015350_copa.rda"

plotSigPattern

If plotSigPattern==TURE, it will generate heatmap plots (TIFF format) for both input peak count candidate list and its corresponding randomized candiate list.

Author(s)

Binhua Tang <bh.tang@outlook.com>

References

1. Tang B, Hsu H-K, Hsu P-Y, Bonneville R, Chen S-S, Huang TH-M, et al. Hierarchical modularity in ER¦Á transcriptional network is associated with distinct functions and implicates clinical outcomes. NPG Scientific Reports. 2012;2.

Examples

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library(COPAR)
## check the help docs.
?copar.SigPattern
## run copar.SigPattern
copar.SigPattern(inpFile = "SRR015350_copa.rda",
                 plotSigPattern = T)

gladex/COPAR documentation built on Sept. 12, 2021, 1:07 p.m.