copar.SigPattern: Peak Count Candidate Signal Pattern Analysis.

In gladex/COPAR: ChIP-seq Optimal Peak AnalyzeR

Description

This package function will analyze the signal pattern of the detected peak count candidate list. Together it will generate a heatmap plot (TIFF format) for the randomized sequence of the detected peak count candiate list.

Usage

copar.SigPattern(inpFile = "SRR015350_copa.rda",
                plotSigPattern = T)

Arguments

inpFile	The input data file, e.g. inpFile = "SRR015350_copa.rda"
plotSigPattern	If plotSigPattern==TURE, it will generate heatmap plots (TIFF format) for both input peak count candidate list and its corresponding randomized candiate list.

Author(s)

Binhua Tang <[e-mail]>

References

1. Tang B, Hsu H-K, Hsu P-Y, Bonneville R, Chen S-S, Huang TH-M, et al. Hierarchical modularity in ER¦Á transcriptional network is associated with distinct functions and implicates clinical outcomes. NPG Scientific Reports. 2012;2.

Examples

library(COPAR)
## check the help docs.
?copar.SigPattern
## run copar.SigPattern
copar.SigPattern(inpFile = "SRR015350_copa.rda",
                 plotSigPattern = T)

gladex/COPAR documentation built on Sept. 12, 2021, 1:07 p.m.