do.survival: does survival analysis

In graeberlab/small.cell.project: small.cell.project

Description

Reads file with features(PC's) in columns and samples in rows. And an annotation file.You pick a max # of features. Using caret runs a prediction iteratively from 2 to max.features. Picks best predictor with least featurs. Returns samples correctly predicted leaves out those samples incorrectly predicted.

Usage

do.survival(threshold = 0, pattern, path, output_folder,
  component = "comp.1", pred_file = T, plsda = F)

Arguments

threshold	threshold to use to pick samples
pattern	pattern of prediction files
path	location of prediction files
output_folder	the output folder
component	component to use
pred_file	using scores or a file with predictions

graeberlab/small.cell.project documentation built on May 12, 2019, 5:16 p.m.