create_RRHO_file_intersect_then_rank: create RRHO file after intersecting

In graeberlab/small.cell.project: small.cell.project

Description

create RRHO file after intersecting

Usage

create_RRHO_file_intersect_then_rank(metric_file1, metric_file2,
  outfile.prefix = paste0("rankrank.", metric_file1, "_vs_",
  metric_file2), metric.col.file1 = 2, metric.col.file2 = 2,
  rank1 = "desc", rank2 = "desc")

Arguments

metric_file1	filepath of first metric file. usually 2 columns. should have no headers. first column is gene name. second column is metric. does not need to be sorted
metric_file2	filepath of second metric file. usually 2 columns. should have no headers. first column is gene name. second column is metric. does not need to be sorted
metric.col.file1	# of the column that metric data is in for file 1
metric.col.file2	# of the column that metric data is in for file 2
outfile_prefix	prefix of the output file

graeberlab/small.cell.project documentation built on May 12, 2019, 5:16 p.m.