do_full_boxplot_RNA: create tcga boxplots

In graeberlab/small.cell.project: small.cell.project

Description

Creates boxplots from prediction scores from pls or plsda Makes some boxplots

Creates boxplots from prediction scores from pls or plsda Makes some boxplots

Usage

do_full_boxplot_RNA(file_pattern, tcga_location, crpc_file, nepc_file,
  sclc_file, output_folder, comp.x = "comp.1", components = 3,
  threshold = 3)

do_full_boxplot_RNA(file_pattern, tcga_location, crpc_file, nepc_file,
  sclc_file, output_folder, comp.x = "comp.1", components = 3,
  threshold = 3)

Arguments

tcga_location	location of predicted files of tcga
crpc_file	location of predicted file of crpc
nepc_file	location of predicted file of nepc
sclc_file	location of predicted file of sclc
output_folder	the folder to output to, default is ./ i.e. current folder
pattern	pattern to grep for in files that have predictions
pattern	pattern to grep for in files that have predictions
tcga_location	location of predicted files of tcga
crpc_file	location of predicted file of crpc
nepc_file	location of predicted file of nepc
sclc_file	location of predicted file of sclc
output_folder	the folder to output to, default is ./ i.e. current folder

graeberlab/small.cell.project documentation built on May 12, 2019, 5:16 p.m.