plot_pls: Plot PLS

In graeberlab/small.cell.project: small.cell.project

Description

Plots PLS from scores file (output of PLSR_from_file)

Usage

plot_pls(file, info.name, info.type, title = "", labels = TRUE,
  PCx = "comp.1", PCy = "comp.2", ellipse = F, conf = 0.95,
  saveplot = F, savename = "default", savetype = ".pdf", w = 8,
  h = 6, legendname = "type", colpalette = NULL)

Arguments

file	File containing scores matrix
info.name	Vector of sample names
info.type	Vector of sample types in the same order
title	Title of the plot
labels	default=T
PCx, PCy	PCs to display
ellipse	Construct confidence region based on groups in info.type, default = T
conf	default = 0.95
saveplot	do you want to save the plot
savetype	default=".pdf", ".png" is also possible
w	width default=8
h	height default=6
h	colpalette can add your own vector of colors to color groups. default is ggplot default colors
h	legendname legend name

graeberlab/small.cell.project documentation built on May 12, 2019, 5:16 p.m.