Files in grishagin/RIGbiopax
Extract and Compare Genes and Pathways from BioPAX
DESCRIPTION
LICENSE
NAMESPACE
R/.Rhistory
R/MAIN_biopax_toxdb_comparison_summary.R
R/MAIN_compare_summarize_inxight2biopax.R
R/MAIN_compare_toxdb_biopax.R
R/add_db_ids.R
R/add_symbols_entrezids2biopax.R
R/add_symbols_entrezids_mult_keytypes.R
R/add_symbols_entrezids_single_keytype.R
R/biopax_from_dt.R
R/clean_biopax.R
R/compare_pw_components.R
R/extract_pathways_from_biopax.R
R/gene_bag_to_biopax.R
R/genes_and_interactions_to_biopax.R
R/get_netpath_owls.R
R/internal_add_biopax_ids.R
R/internal_analyse_toxdb_biopax_results_df.R
R/internal_checkValidity_Rancho.R
R/internal_generateXMLfromBiopax_Rancho.R
R/internal_keep_property_class_list.R
R/internal_prepare_quantile_summary.R
R/internal_rm_dupl_biopax_comp.R
R/internal_rm_duplicated_biopax_pw.R
R/internal_seq_along_find_reps.R
R/load_biopax.R
R/load_biopax_file.R
R/load_biopax_pathways.R
R/load_inxight_genes_per_source.R
R/merge_biopax_files.R
R/merge_gene_comparison_results.R
R/remove_deadend_refs.R
R/remove_duplicate_biopax_components.R
R/split_pathway_into_chunks.R
R/splitbiopax_from_dt.R
R/striphash.R
R/unify_biopax_ids.R
R/update_RIGbiopax.R
R/writeBiopax_Rancho.R
README.md
inst/extdata/biopax_objects_current_version.RData
inst/extdata/human_pathways_rbs_curated_current_version.xlsx
inst/extdata/inxight_pathways_current_version.txt
inst/extdata/pathways_matched_to_sources_current_version.xlsx
inst/extdata/unify_db_names.xlsx
make_documentation_v2.RScript
man/.Rhistory
man/MAIN_biopax_toxdb_comparison_summary.Rd
man/MAIN_compare_summarize_inxight2biopax.Rd
man/MAIN_compare_toxdb_biopax.Rd
man/add_db_ids.Rd
man/add_symbols_entrezids2biopax.Rd
man/add_symbols_entrezids_mult_keytypes.Rd
man/add_symbols_entrezids_single_keytype.Rd
man/adjust_columns.Rd
man/biopax_from_dt.Rd
man/clean_biopax.Rd
man/clean_biopax_property_value.Rd
man/compare_pw_components.Rd
man/extract_pathways_from_biopax.Rd
man/gene_bag_to_biopax.Rd
man/genes_and_interactions_to_biopax.Rd
man/get_netpath_owls.Rd
man/load_biopax.Rd
man/load_biopax_file.Rd
man/load_biopax_pathways.Rd
man/load_inxight_genes_per_source.Rd
man/merge_biopax_files.Rd
man/merge_gene_comparison_results.Rd
man/remove_deadend_refs.Rd
man/remove_duplicate_biopax_components.Rd
man/split_pathway_into_chunks.Rd
man/splitbiopax_from_dt.Rd
man/striphash.Rd
man/unify_biopax_ids.Rd
man/update_RIGbiopax.Rd
man/writeBiopax_Rancho.Rd
