extract_pathways_from_biopax: Extract Pathways from BioPAX

Description Usage Arguments Author(s)

Description

Extract pathways from a BioPAX object, then convert them into a separate biopax object.

Usage

1
2
extract_pathways_from_biopax(biopax, pw_ids, filename = NULL,
  exclude_subpw_comp_patt = NULL)

Arguments

biopax

BioPAX object.

pw_ids

Pathway ids to extract.

filename

Filename of the new BioPAX

exclude_subpw_comp_patt

Pattern of sub-pathways, whose components will be excluded, i.e. the main pathway will refer to them, but the references to their components will be removed.

Author(s)

Ivan Grishagin


grishagin/RIGbiopax documentation built on May 24, 2019, 1:33 a.m.