remove_duplicate_biopax_components: Remove Duplicate Components from BioPAX Object
In grishagin/RIGbiopax: Extract and Compare Genes and Pathways from BioPAX
Description
Usage
Details
Author(s)
Description
BioPAX objects frequently have components that are identical in everything, but id.
This function removes all such duplicates, and changes all property_attr_values accordingly.
Usage
1
Details
The biopax is processed iteratively.
First, two sets of properties are used to identify and remove:
1) duplicate term-db-id, db-id, and position-status instances;
2) duplicate instances that refer to instance listed in 1) –
they have properties xref, term, evidenceCode, featureLocation,
modificationType, sequenceIntervalBegin, sequenceIntervalEnd.
Second, two sets of classes are used to identify and remove:
1) duplicate Protein, SmallMolecule, PhysicalEntity, RNA, DNA instances;
2) duplicate Complex instances.
Author(s)
Ivan Grishagin
grishagin/RIGbiopax documentation built on May 24, 2019, 1:33 a.m.
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Description Usage Details Author(s)
Description
BioPAX objects frequently have components that are identical in everything, but id. This function removes all such duplicates, and changes all property_attr_values accordingly.
Usage
1 |
Details
The biopax is processed iteratively.
First, two sets of properties are used to identify and remove:
1) duplicate term-db-id, db-id, and position-status instances;
2) duplicate instances that refer to instance listed in 1) –
they have properties xref, term, evidenceCode, featureLocation,
modificationType, sequenceIntervalBegin, sequenceIntervalEnd.
Second, two sets of classes are used to identify and remove:
1) duplicate Protein, SmallMolecule, PhysicalEntity, RNA, DNA instances;
2) duplicate Complex instances.
Author(s)
Ivan Grishagin
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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