splitbiopax_from_dt: Convert BioPAX Object to List of BioPAX Objects (by Pathway)

Description Usage Arguments Details Author(s)

Description

Splits a BioPAX object into a list of BioPAX objects by pathway. Has an option of recording all of these BioPAX objects to files.

Usage

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splitbiopax_from_dt(biopax, pwtoextract = NULL, write_to_files = FALSE,
  unifyids = TRUE)

Arguments

biopax

BioPAX object.

pwtoextract

Vector of pathway ids. If NULL (default), all pathways are extracted.

write_to_files

Logical. Write to files? Default is FALSE.

unifyids

Logical. Unify IDs by making all elements of one class receive ids in the form "ClassNUMBER", with NUMBER ranging from one to number of elements of such class? Default is TRUE.

Details

Returns a list of biopax objects.

Author(s)

Ivan Grishagin


grishagin/RIGbiopax documentation built on May 24, 2019, 1:33 a.m.