MAIN_biopax_toxdb_comparison_summary: Prepare BioPAX-ToxDB Comparison Summary

In grishagin/RIGbiopax: Extract and Compare Genes and Pathways from BioPAX

Description

Prepares comprehensive summary of comparison of genes in BioPAX sources to ToxDB gene list.

Usage

MAIN_biopax_toxdb_comparison_summary(output_dir = "./summary",
  pw_matchup_file = "default", pw_src_file = "default", genes_df)

Arguments

output_dir	Output directory (will be created if non-existent).
pw_matchup_file	File with pathway matchups between BioPAX sources and Inxight Pathways list.
pw_src_file	Inxight Pathways spreadsheet with pathway curation information.
genes_df	Either a dataframe with BioPAX-ToxDB gene comparison or a filename of a spreadsheet with such dataframe.

Author(s)

Ivan Grishagin

grishagin/RIGbiopax documentation built on May 24, 2019, 1:33 a.m.