Man pages for grishagin/RIGbiopax
Extract and Compare Genes and Pathways from BioPAX
| add_db_ids | Extract DB IDs for All Proteins in Pathway |
| add_symbols_entrezids2biopax | Annotate a BioPAX Object with Gene ID and Gene Symbol |
| add_symbols_entrezids_mult_keytypes | Annotate DataFrame with Gene ID and Gene Symbol |
| add_symbols_entrezids_single_keytype | Annotate DataFrame with Gene ID and Gene Symbol |
| adjust_columns | Add Columns of a Dataframe Based on Another Dataframe |
| biopax_from_dt | Convert a BioPAX-Style Data Table to BioPAX Object |
| clean_biopax | Clean BioPAX Object |
| clean_biopax_property_value | Clean up BioPAX property_value Column |
| compare_pw_components | Compare Proteins Extracted from BioPAX Pathway to Source... |
| extract_pathways_from_biopax | Extract Pathways from BioPAX |
| gene_bag_to_biopax | Convert a "Gene Bag" Data Table to BioPAX Object |
| genes_and_interactions_to_biopax | Convert a Data Table with Genes and Interactions to BioPAX... |
| get_netpath_owls | Download NetPath BioPAX Files |
| load_biopax | Load BioPAX from Environment or OWL or Workspace File |
| load_biopax_file | Load BioPAX from OWL File |
| load_biopax_pathways | Load BioPAX Pathways From BioPAX Object |
| load_inxight_genes_per_source | Load Dataframe with Genes/Pathways |
| MAIN_biopax_toxdb_comparison_summary | Prepare BioPAX-ToxDB Comparison Summary |
| MAIN_compare_summarize_inxight2biopax | Compare and Summarize Source BioPAX files to Inxight Pathways... |
| MAIN_compare_toxdb_biopax | Compare Proteins Extracted from BioPAX to ToxDB Proteins |
| merge_biopax_files | Merge Multiple BioPAX Files into One File |
| merge_gene_comparison_results | Merge Multiple Gene Comparison Results into One File |
| remove_deadend_refs | Remove Dead-End References from BioPAX |
| remove_duplicate_biopax_components | Remove Duplicate Components from BioPAX Object |
| splitbiopax_from_dt | Convert BioPAX Object to List of BioPAX Objects (by Pathway) |
| split_pathway_into_chunks | Split BioPAX Pathway into N Chunks |
| striphash | Remove # from String |
| unify_biopax_ids | Uniformly Format IDs in BioPAX |
| update_RIGbiopax | Update RIGbiopax from GitHub |
| writeBiopax_Rancho | Write BioPAX Object to File |
