Hit-class: Class '"Hit"'

In gschofl/blastr: A wrapper for NCBI Blast

Description

An S4 class that serves as a container for information parsed from an NCBI BLAST XML hit element. Information about multiple BLAST hits within a query is contained in a HitList.

Slots

hit_num

The number of the hit; <integer>.

hit_def

Hit definition; <DeflineSet>.

hit_acc

Accession number; <character>.

hit_len

Length of hit; <integer>.

hsps

List of HSPs; <HspList>.

query_env

Shared container for query_id, query_def, query_len, and hit_len; >environment>.

See Also

BlastReport

Examples

showClass("Hit")

gschofl/blastr documentation built on May 17, 2019, 8:52 a.m.