QueryList-class: Class '"QueryList"' of '"Query"' objects

In gschofl/blastr: A wrapper for NCBI Blast

Description

An S4 class that holds a list of Query objects.

Usage

## S4 method for signature 'QueryList'
nhsps(x)

## S4 method for signature 'QueryList'
getHit(x, i, drop = TRUE, ...)

## S4 method for signature 'QueryList'
nhits(x)

## S4 method for signature 'QueryList'
getQueryNum(x)

## S4 method for signature 'QueryList'
getQueryID(x)

## S4 method for signature 'QueryList'
getQueryDef(x)

## S4 method for signature 'QueryList'
getQueryLen(x)

Methods (by generic)

• nhsps: Returns the number of HSPs for each hit for each query; <list> of <integers>.

• getHit: Returns a list of Hits or HitLists

• nhits: Returns the numbers of hits; <list> of <numerics>.

• getQueryNum: Returns the query (iteration) numbers; <integer>.

• getQueryID: Returns the query IDs; <character>.

• getQueryDef: Returns the query definitions; <character>.

• getQueryLen: Returns the query lengths; <integer>.

Slots

query_env

Shared container for query_id, query_def, query_len, and hit_len; "environment".

.Data

Inherited from the list class.

See Also

BlastReport

Examples

showClass("QueryList")

gschofl/blastr documentation built on May 17, 2019, 8:52 a.m.