update_blastdb: Wrapper for 'update_blastdb'

In gschofl/blastr: A wrapper for NCBI Blast

Description

Download pre-formatted BLAST databases from NCBI ftp site.

Usage

update_blastdb(..., destdir = getOption("blastr.blastdb.path") %||% ".",
  decompress = TRUE, showall = FALSE, passive = FALSE, timeout = 120,
  force = FALSE)

Arguments

...	Blast db to download
destdir	Destination directory for databases.
decompress	if TRUE, decompresses the archives in destdir and deletes the downloaded archives.
showall	if TRUE, show all available pre-formatted BLAST databases.
passive	Use passive FTP.
timeout	Timeout on connection to NCBI (default: 120 seconds).
force	Force download even if there is a archive already on local directory.

Examples

update_blastdb(showall = TRUE)
## Not run: 
update_blastdb("16SMicrobial", "human_genomic")

## End(Not run)

gschofl/blastr documentation built on May 17, 2019, 8:52 a.m.