Description Usage Arguments Value Author(s) Examples
The function computes the size factors for given factor groups based on the DESeq2 package.
1 | computeSizeFactors(ggd, factorGroups = NULL)
|
ggd |
A GenoGAMDataSet object. |
factorGroups |
A list of grouped IDs (same as the colnames of the GenoGAMDataSet object). Each element of the list represents a group of samples within which size factors are computed. If NULL all samples are regarded to belong to one group. |
A GenoGAMDataSet object, where the sizeFactors slot is updated.
Georg Stricker georg.stricker@in.tum.de
1 2 3 4 5 6 | ggd <- makeTestGenoGAMDataSet()
ggd <- computeSizeFactors(ggd)
sizeFactors(ggd)
groups <- list(c("wt_1", "wt_2"), c("mutant_1", "mutant_2"))
ggd <- computeSizeFactors(ggd, factorGroups = groups)
sizeFactors(ggd)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.