Files in gtonkinhill/panstripe
Pangenome Plots
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/RcppExports.R
R/asr_parsimony.R
R/compare_pangenome_covariates.R
R/compare_pangenomes.R
R/dglm_mod.R
R/panfit.R
R/panstripe.R
R/plot_acc.R
R/plot_gain_loss.R
R/plot_pairwise.R
R/plot_pangenome_branches.R
R/plot_pangenome_cumulative.R
R/plot_pangenome_curve.R
R/plot_pangenome_params.R
R/plot_residuals.R
R/plot_tree_pa.R
R/plot_tsne.R
R/read_rtab.R
R/sfreemap.R
R/simulate_pan.R
R/utils-pipe.R
README.Rmd
README.md
inst/extdata/gene_presence_absence.Rtab
inst/extdata/tree.newick
inst/vignette-supp/header.md
inst/vignette-supp/panstripe.png
inst/vignette-supp/unnamed-chunk-10-1.png
inst/vignette-supp/unnamed-chunk-11-1.png
inst/vignette-supp/unnamed-chunk-12-1.png
inst/vignette-supp/unnamed-chunk-13-1.png
inst/vignette-supp/unnamed-chunk-14-1.png
inst/vignette-supp/unnamed-chunk-15-1.png
inst/vignette-supp/unnamed-chunk-15-2.png
inst/vignette-supp/unnamed-chunk-16-1.png
inst/vignette-supp/unnamed-chunk-17-1.png
inst/vignette-supp/unnamed-chunk-18-1.png
inst/vignette-supp/unnamed-chunk-19-1.png
inst/vignette-supp/unnamed-chunk-4-1.png
inst/vignette-supp/unnamed-chunk-4-2.png
inst/vignette-supp/unnamed-chunk-5-1.png
inst/vignette-supp/unnamed-chunk-6-1.png
inst/vignette-supp/unnamed-chunk-7-1.png
inst/vignette-supp/unnamed-chunk-8-1.png
inst/vignette-supp/unnamed-chunk-9-1.png
man/compare_pangenome_covariates.Rd
man/compare_pangenomes.Rd
man/new_panfit.Rd
man/panstripe.Rd
man/pipe.Rd
man/plot_acc.Rd
man/plot_gain_loss.Rd
man/plot_pairwise.Rd
man/plot_pangenome_cumulative.Rd
man/plot_pangenome_params.Rd
man/plot_residuals.Rd
man/plot_tree_pa.Rd
man/plot_tsne.Rd
man/print.panfit.Rd
man/read_rtab.Rd
man/sfreemap.Rd
man/simulate_pan.Rd
man/validate_panfit.Rd
src/RcppExports.cpp
src/asr_parsimony.cpp
src/dwelling_times.cpp
src/fractional_likelihoods.cpp
src/log_add_sub.cpp
src/log_add_sub.h
vignettes/Introduction.Rmd
