plot_residuals: plot_residuals

In gtonkinhill/panstripe: Pangenome Plots

plot_residuals

Description

Plots the randomized quantile residuals of the fitted regression model as described in Dunn and Smyth (1996). This plot can be used to assess the fit of the regression.

Usage

plot_residuals(fit, plot = TRUE, text_size = 14)

Arguments

fit	the result of running the 'panstripe' function.
plot	whether to generate the plot (default) or return a data.frame
text_size	the base text size of the plot (default=14)

Value

either a ggplot2 object or a 'data.frame' with the data needed to recreate the plot

Examples

sim <- simulate_pan(rate=1e-4)
fA <- panstripe(sim$pa, sim$tree, nboot=0)
plot_residuals(fA)

gtonkinhill/panstripe documentation built on Feb. 27, 2025, 9:01 p.m.