plot_acc: plot_acc
In gtonkinhill/panstripe: Pangenome Plots
plot_acc R Documentation
plot_acc
Description
Plots a pangenome accumulation curve.
Usage
plot_acc(pa, nperm = 100, legend = TRUE, text_size = 14, color_pallete = 6)
Arguments
pa
a gene precence/absence matrix. Alternatively a list of matrices can be given.
nperm
the number of permutation to perform (default=100)
legend
whether or not to plot the legend (default=TRUE)
text_size
adjusts the size of text in the plot
color_pallete
the colour pallete to use. A number between 1 & 9. See 'scale_colour_brewer' for more details
Value
a plot of the pangenome accumulation curve
Examples
sim <- simulate_pan(rate=1e-3)
pa <- sim$pa
plot_acc(pa, color_pallete=7)
gtonkinhill/panstripe documentation built on Feb. 27, 2025, 9:01 p.m.
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| plot_acc | R Documentation |
plot_acc
Description
Plots a pangenome accumulation curve.
Usage
plot_acc(pa, nperm = 100, legend = TRUE, text_size = 14, color_pallete = 6)
Arguments
pa |
a gene precence/absence matrix. Alternatively a list of matrices can be given. |
nperm |
the number of permutation to perform (default=100) |
legend |
whether or not to plot the legend (default=TRUE) |
text_size |
adjusts the size of text in the plot |
color_pallete |
the colour pallete to use. A number between 1 & 9. See 'scale_colour_brewer' for more details |
Value
a plot of the pangenome accumulation curve
Examples
sim <- simulate_pan(rate=1e-3)
pa <- sim$pa
plot_acc(pa, color_pallete=7)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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