sfreemap: sfreemap
In gtonkinhill/panstripe: Pangenome Plots
sfreemap R Documentation
sfreemap
Description
This function has been adapted and simplified from the code in the sfreemap R package (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1554-7).
Usage
sfreemap(tree, pa, type = "standard", model = "ER", quiet = FALSE)
Arguments
tree
pa
type
model
method
tol
Details
Simulation free stochastic character mapping on a phylogenetic tree.
Value
result
Examples
## Not run:
tree <- ape::rtree(10)
pa <- matrix(rbinom(10, 1, 0.5), ncol=1)
rownames(pa) <- tree$tip.label
sfreemap(tree, pa)
## End(Not run)
gtonkinhill/panstripe documentation built on Feb. 27, 2025, 9:01 p.m.
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| sfreemap | R Documentation |
sfreemap
Description
This function has been adapted and simplified from the code in the sfreemap R package (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1554-7).
Usage
sfreemap(tree, pa, type = "standard", model = "ER", quiet = FALSE)
Arguments
tree |
|
pa |
|
type |
|
model |
|
method |
|
tol |
Details
Simulation free stochastic character mapping on a phylogenetic tree.
Value
result
Examples
## Not run:
tree <- ape::rtree(10)
pa <- matrix(rbinom(10, 1, 0.5), ncol=1)
rownames(pa) <- tree$tip.label
sfreemap(tree, pa)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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