gtonkinhill/rhierbaps: Clustering Genetic Sequence Data Using the HierBAPS Algorithm
Implements the hierarchical Bayesian analysis of populations structure (hierBAPS) algorithm of Cheng et al. (2013) <doi:10.1093/molbev/mst028> for clustering DNA sequences from multiple sequence alignments in FASTA format. The implementation includes improved defaults and plotting capabilities and unlike the original 'MATLAB' version removes singleton SNPs by default.
Getting started
Browse package contents
Package details |
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| Maintainer | |
| License | MIT + file LICENSE |
| Version | 1.1.3 |
| URL | https://github.com/gtonkinhill/rhierbaps |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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