Description Usage Arguments Value
View source: R/reallocate_units_4.R
Peform an iteration of the fourth move in the algorithm. That is split cluster into n subclusters and re-allocate one sub-cluster.
1 2 3 4 5 6 7 8 | reallocate_units_4(
snp.object,
partition,
threshold = 1e-05,
min.clust.size = 20,
split = FALSE,
n.cores = 1
)
|
snp.object |
A snp.object containing the processed SNP data. |
partition |
An integer vector indicating an initial partition of the isolates. |
threshold |
The increase in marginal log likelihood required to accept a move. |
min.clust.size |
Clusters smaller than min.clust.size will not be split. |
split |
Whether to split only into two clusters (for move type 3). |
n.cores |
The number of cores to use. |
The best partition after splitting a cluster and re-allocating as well as a boolean value indicating whether a move increased the marginal likelihood.
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