model_search_parallel: model_search_parallel

In gtonkinhill/rhierbaps: Clustering Genetic Sequence Data Using the HierBAPS Algorithm

Description

Clusters DNA alignment using independent loci model

Usage

model_search_parallel(
  snp.object,
  partition,
  round.types,
  quiet = FALSE,
  n.extra.rounds = 0,
  n.cores = 1
)

Arguments

snp.object	A snp.object containing the processed SNP data.
partition	An integer vector indicating an initial starting partition.
round.types	A vector indicating which series of moves to make.
quiet	Whether to suppress progress information (default=FALSE).
n.extra.rounds	The number of additional rounds to perform after the default hierBAPS settings (default=0). If set to Inf it will run until a local optimum is reached (this might take a long time).
n.cores	The number of cores to use.

Value

an optimised partition and marginal llk

gtonkinhill/rhierbaps documentation built on May 3, 2021, 9:04 p.m.