calc_change_in_ml: calc_change_in_ml
In gtonkinhill/rhierbaps: Clustering Genetic Sequence Data Using the HierBAPS Algorithm
Description
Usage
Arguments
Value
View source: R/calc_change_in_ml.R
Description
Calculate the change in the log marginal likelihood after moving index to each possible cluster
Usage
1
calc_change_in_ml(snp.object, partition, indexes)
Arguments
snp.object
A snp.object containing the processed SNP data.
partition
An integer vector indicating a partition of the isolates.
indexes
Indexes of the isolates to be moved (must come from one cluster.)
Value
the best cluster to move indexes to.
gtonkinhill/rhierbaps documentation built on May 3, 2021, 9:04 p.m.
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Description Usage Arguments Value
View source: R/calc_change_in_ml.R
Description
Calculate the change in the log marginal likelihood after moving index to each possible cluster
Usage
1 | calc_change_in_ml(snp.object, partition, indexes)
|
Arguments
snp.object |
A snp.object containing the processed SNP data. |
partition |
An integer vector indicating a partition of the isolates. |
indexes |
Indexes of the isolates to be moved (must come from one cluster.) |
Value
the best cluster to move indexes to.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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