Man pages for guokai8/bioAnno
Build Annotation From Online Database
| ath | TAIR10 geneid to ENTREZID |
| dot-extratGene | extract gene information from NCBI |
| dot-extratGO | extract GO information from NCBI and filter by taxid |
| dot-getdbname | get database name by using species name |
| dot-getmartdb | get species information in Ensembl |
| dot-get.species.info | modified from pathview kegg.species.code |
| dot-show.path | show the package path |
| dot-show.tables | show the package content |
| fromAnnHub | extract annotation database by using AnnotationHub |
| fromEnsembl | build annotation from ensembl |
| fromKEGG | make annotation database from KEGG and GO from NCBI |
| fromNCBI | build annotation database from NCBI |
| fromOwn | build Own annotation database with user defined annotation... |
| getTable | get annotataion table from temporary package |
| is_installed | check package installed or not |
| korg | korg |
| listSpecies | list species available in Ensembl |
| mergeDB | merge two orgDB with keys |
| simpleCap | uppercase the first letter |
