mergeDB: merge two orgDB with keys

In guokai8/bioAnno: Build Annotation From Online Database

merge two orgDB with keys

Description

merge two orgDB with keys

Usage

mergeDB(
  dbleft,
  dbright,
  keyleft = "GID",
  keyright = "GID",
  keytype = NULL,
  keep = NULL,
  species = NULL,
  author = NULL,
  maintainer = NULL,
  tax_id = NULL,
  genus = NULL,
  version = NULL,
  pkgname = NULL,
  install = TRUE,
  outputDir = NULL,
  rebuild = FALSE
)

Arguments

dbleft	a charater indicate the left orgDB
dbright	a character indicate the right orgDB
keyleft	the keytype use for merging in left orgDB
keyright	the keytype use for merging in the right orgDB
keytype	the keytypes to be included in the merged orgDB ("GID","GENENAME")
keep	the name of keytype you used if keyleft and keyright were not same
species	the species name
author	author for the annotation package
maintainer	maintainer for the annotation package
tax_id	taxonomy id for the species
genus	genus name for the annotation package
version	version number for the annotation package
pkgname	package name you want to choose
install	install the package or not(default: TRUE)
outputDir	temporary output path
rebuild	rebuild the package or not(default: FALSE)

Author(s)

Kai Guo

Examples

fromKEGG(species = "hsa", anntype="KEGG")
fromAnnHub(species="human")
mergeDB("org.hsa.eg.db","org.human.eg.db",species="merge")

guokai8/bioAnno documentation built on May 8, 2023, 12:42 p.m.