fromAnnHub: extract annotation database by using AnnotationHub

In guokai8/bioAnno: Build Annotation From Online Database

extract annotation database by using AnnotationHub

Description

extract annotation database by using AnnotationHub

Usage

fromAnnHub(
  species,
  author = NULL,
  maintainer = NULL,
  tax_id = NULL,
  genus = NULL,
  version = NULL,
  install = TRUE,
  pkgname = NULL,
  outputDir = NULL,
  rebuild = FALSE
)

Arguments

species	species name(common name,kegg.species.code or scientifc name)
author	author for the annotation package
maintainer	maintainer for the annotation package
tax_id	taxonomy id for the species
genus	genus for the species
version	version for the annotation package
install	install the package or not
pkgname	package name you want to choose
outputDir	temporary file path
rebuild	rebuild the package or not(default: FALSE)

Value

annotation package

Author(s)

Kai Guo

Examples

## build annoataion package for c elegans
fromAnnHub(species = "celegans", install = FALSE)

guokai8/bioAnno documentation built on May 8, 2023, 12:42 p.m.