fromKEGG: make annotation database from KEGG and GO from NCBI

In guokai8/bioAnno: Build Annotation From Online Database

make annotation database from KEGG and GO from NCBI

Description

make annotation database from KEGG and GO from NCBI

Usage

fromKEGG(
  species = "ath",
  anntype = c("KEGG"),
  author = NULL,
  maintainer = NULL,
  tax_id = NULL,
  genus = NULL,
  version = NULL,
  pkgname = NULL,
  install = TRUE,
  outputDir = NULL,
  rebuild = FALSE
)

Arguments

species	species name(common name,kegg.species.code or scientifc name)
anntype	the type of function annotation(GO,KEGG,) you want get from KEGG
author	author for the annotation package
maintainer	maintainer for the annotation package
tax_id	taxonomy id for the species
genus	genus for the species
version	version for the annotation package
pkgname	package name you want to choose
install	install the package or not(default: TRUE)
outputDir	temporary output path
rebuild	rebuild the package or not(default: FALSE)

Value

annotation package

Author(s)

Kai Guo

Examples

fromKEGG(species = "eco", install = FALSE)

guokai8/bioAnno documentation built on May 8, 2023, 12:42 p.m.