fromNCBI: build annotation database from NCBI

In guokai8/bioAnno: Build Annotation From Online Database

build annotation database from NCBI

Description

build annotation database from NCBI

Usage

fromNCBI(
  species = "ath",
  author = NULL,
  maintainer = NULL,
  tax_id = NULL,
  genus = NULL,
  version = NULL,
  install = TRUE,
  pkgname = NULL,
  outputDir = NULL,
  rebuild = FALSE
)

Arguments

species	species name
author	author for the annotation package
maintainer	maintainer for the annotation package
tax_id	taxonomy id for the species
genus	genus for the species
version	version for the annotation package
install	install the package or not(default: TRUE)
pkgname	package name you want to choose
outputDir	temporary output path
rebuild	rebuild the package or not(default: FALSE)

Value

annotation package

Author(s)

Kai Guo

Examples

## build annoataion package for Ecoli
fromNCBI(species = "eco", install = FALSE)

guokai8/bioAnno documentation built on May 8, 2023, 12:42 p.m.