Description Usage Arguments Value Author(s) Examples
Calculate differential bacteria with DESeq2
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physeq |
A |
group |
group (DESeq2). A character string specifying the name of a categorical variable containing grouping information. |
ref |
reference group |
pvalue |
pvalue threshold for significant results |
padj |
adjust p value threshold for significant results |
log2FC |
log2 Fold Change threshold |
gm_mean |
TRUE/FALSE calculate geometric means prior to estimate size factors |
fitType |
either "parametric", "local", or "mean" for the type of fitting of dispersions to the mean intensity. |
quiet |
whether to print messages at each step |
datafame with differential test with DESeq2
Kai Guo
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