glmr: Do the generalized linear model regression

In guokai8/microbial: Do 16s Data Analysis and Generate Figures

Description

Do the generalized linear model regression

Usage

glmr(
  physeq,
  group,
  factors = NULL,
  ref = NULL,
  family = binomial(link = "logit")
)

Arguments

physeq	phyloseq object
group	the group factor to regression
factors	a vector to indicate adjuested factors
ref	the reference group
family	binomial() or gaussian()

Author(s)

Kai Guo

Examples

data("Physeq")
phy<-normalize(physeq)
fit <-glmr(phy,group="SampleType")

guokai8/microbial documentation built on Nov. 10, 2021, 1:43 a.m.