plotmarker: plot the biomarker from the biomarker function with...

In guokai8/microbial: Do 16s Data Analysis and Generate Figures

plot the biomarker from the biomarker function with randomForest

Description

plot the biomarker from the biomarker function with randomForest

Usage

plotmarker(
  x,
  level = "Genus",
  top = 30,
  rotate = FALSE,
  dot.size = 8,
  label.color = "black",
  label.size = 6
)

Arguments

x	biomarker results from randomForest
level	the bacteria level to display
top	the number of important biomarker to draw
rotate	TRUE/FALSE
dot.size	size for the dot
label.color	label color
label.size	label size

Value

ggplot2 object

Author(s)

Kai Guo

Examples

data("Physeq")
res <- biomarker(physeq,group="group")
plotmarker(res,level="Genus")

guokai8/microbial documentation built on Oct. 15, 2024, 11:32 p.m.