prefilter: filter the phyloseq

In guokai8/microbial: Do 16s Data Analysis and Generate Figures

filter the phyloseq

Description

filter the phyloseq

Usage

prefilter(physeq, min = 10, perc = 0.05)

Arguments

physeq	A phyloseq object containing merged information of abundance, taxonomic assignment, sample data including the measured variables and categorical information of the samples, and / or phylogenetic tree if available.
min	Numeric, the threshold for mininal Phylum shown in samples
perc	Numeric, input the percentage of samples for which to filter low counts.

Value

filter phyloseq object

Author(s)

Kai Guo

Examples

data("Physeq")
physeqs<-prefilter(physeq)

guokai8/microbial documentation built on July 23, 2024, 4:14 a.m.