plotquality: plot the quality for the fastq file

In guokai8/microbial: Do 16s Data Analysis and Generate Figures

plot the quality for the fastq file

Description

plot the quality for the fastq file

Usage

plotquality(file, n = 5e+05, aggregate = FALSE)

Arguments

file	(Required). character. File path(s) to fastq or fastq.gz file(s).
n	(Optional). Default 500,000. The number of records to sample from the fastq file.
aggregate	(Optional). Default FALSE. If TRUE, compute an aggregate quality profile for all fastq files provided.

Value

figure

Examples

plotquality(system.file("extdata", "sam1F.fastq.gz", package="dada2"))

guokai8/microbial documentation built on Oct. 15, 2024, 11:32 p.m.