buildAnnot-methods: make annotation database

In guokai8/scGSVA: GSVA and UCell signature enrichment analysis for single cell RNA seq

make annotation database

Description

Build annotation database

Usage

buildAnnot(
  species = "human",
  keytype = "SYMBOL",
  anntype = "GO",
  builtin = TRUE,
  OP = NULL
)

Arguments

species	species for the annotation
keytype	the gene Id type to extract
anntype	annotation type (GO, KEGG, RO)
builtin	use default database (TRUE or FALSE)
OP	BP, CC, MF default use all

Author(s)

Kai Guo

Examples

## Not run: 
annot<-buildAnnot(species = "human", keytype = "SYMBOL",
                  anntype = "KEGG")

## End(Not run)

guokai8/scGSVA documentation built on Nov. 15, 2024, 12:54 a.m.