findPathway: Fit linear model for each pathway
In guokai8/scGSVA: GSVA and UCell signature enrichment analysis for single cell RNA seq
findPathway R Documentation
Fit linear model for each pathway
Description
Fit linear model for each pathway
Usage
findPathway(object, group = NULL, ref = NULL)
Arguments
object
A GSVA objectect or data.frame
group
Name of one or more metadata columns to group cells to compare
or a vector if the obj is a data.frame
ref
reference group
Author(s)
Kai Guo
Examples
set.seed(123)
library(scGSVA)
data(pbmc_small)
hsko<-buildAnnot(species="human",keytype="SYMBOL",anntype="KEGG")
sc<-scgsva(pbmc_small,hsko)
res <- findPathway(sc, group = "groups", ref = "g1")
guokai8/scGSVA documentation built on Nov. 15, 2024, 12:54 a.m.
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| findPathway | R Documentation |
Fit linear model for each pathway
Description
Fit linear model for each pathway
Usage
findPathway(object, group = NULL, ref = NULL)
Arguments
object |
A GSVA objectect or data.frame |
group |
Name of one or more metadata columns to group cells to compare or a vector if the obj is a data.frame |
ref |
reference group |
Author(s)
Kai Guo
Examples
set.seed(123)
library(scGSVA)
data(pbmc_small)
hsko<-buildAnnot(species="human",keytype="SYMBOL",anntype="KEGG")
sc<-scgsva(pbmc_small,hsko)
res <- findPathway(sc, group = "groups", ref = "g1")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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