sigPathway: Significance testing between groups.

In guokai8/scGSVA: GSVA and UCell signature enrichment analysis for single cell RNA seq

Significance testing between groups.

Description

Significance testing between groups.

Usage

sigPathway(
  object,
  group = NULL,
  test.use = "wilcox",
  ref = NULL,
  method = "BH"
)

Arguments

object	A GSVA objectect or data.frame
group	Name of one or more metadata columns to group cells to compare or a vector if the obj is a data.frame
ref	reference group
method	correction method, a character string

Author(s)

Kai Guo

Examples

set.seed(123)
library(scGSVA)
data(pbmc_small)
hsko<-buildAnnot(species="human",keytype="SYMBOL",anntype="KEGG")
sc<-scgsva(pbmc_small,hsko)
res <- sigPathway(sc, group = "groups")

guokai8/scGSVA documentation built on Nov. 15, 2024, 12:54 a.m.