idconvert: Convert id between different type

In guokai8/scGSVA: GSVA and UCell signature enrichment analysis for single cell RNA seq

Convert id between different type

Description

Convert ID between ENTREZID to SYMBOL or other type ID based on bioconductor annotation package

Usage

idconvert(species, keys, fkeytype, tkeytype)

Arguments

species	species of gene
keys	input gene id
fkeytype	input gene id type
tkeytype	output gene id type

Value

vector

Author(s)

Kai Guo

Examples

## Not run: 
hsako<-buildAnnot(species="human",keytype="SYMBOL",anntype = "KEGG")
hsako<-as.data.frame(hsako)
gene=sample(unique(hsako$GeneID),1000)
id<-idconvert(species="human",fkeytype="SYMBOL",tkeytype="ENTREZID")

## End(Not run)

guokai8/scGSVA documentation built on Nov. 15, 2024, 12:54 a.m.