API for hallucigenia-sparsa/seqgroup
Analysis of Sequencing Data with Groups
| Global functions | |
|---|---|
| .onAttach | Source code |
| aggregateTaxa | Man page Source code |
| assignColorsToGroups | Man page Source code |
| assignMetadataTypes | Man page Source code |
| barebonesCoNet | Man page Source code |
| binaryToMultinomial | Source code |
| buildNetwork | Man page Source code |
| clr | Man page Source code |
| colorGraphWithLineages | Source code |
| colorNetwork | Source code |
| compareDistribs | Man page Source code |
| compareDistribsPure | Source code |
| compareGroups | Man page Source code |
| compareGroupsPlot | Source code |
| computeAssociations | Source code |
| computeKld | Source code |
| computeSignMatrix | Source code |
| correctPvalMatrix | Source code |
| exportSubset | Source code |
| exportToCoNet | Man page Source code |
| filterMetadata | Man page Source code |
| filterSamplesWithMetadataValues | Source code |
| filterTaxonMatrix | Man page Source code |
| findClusters | Man page Source code |
| findClustersGivenK | Source code |
| floresgut_lineages | Man page |
| floresgut_metadata | Man page |
| floresgut_taxa | Man page |
| forbiddenCombisBipartite | Source code |
| formatLineages | Source code |
| get.kld | Source code |
| getColorVectorGivenTaxaAndColorMap | Source code |
| getCoreTaxa | Man page Source code |
| getMetadataSubset | Source code |
| getPval | Source code |
| getRandomLineage | Source code |
| getScores | Source code |
| getTaxonomy | Source code |
| groupBarplot | Man page Source code |
| groupsToNumeric | Source code |
| ibd_functions | Man page |
| ibd_lineages | Man page |
| ibd_metadata | Man page |
| ibd_taxa | Man page |
| intersectTables | Man page Source code |
| is.Count | Source code |
| is.Count.Matrix | Source code |
| listToMat | Source code |
| makeColorsGivenMetadata | Man page Source code |
| makeRandomString | Source code |
| matchAgeAndGender | Source code |
| mergeATC | Man page Source code |
| mergeTables | Man page Source code |
| metadataToNumeric | Man page Source code |
| myNorm | Source code |
| networkIntersectSig | Man page Source code |
| normalize | Man page Source code |
| rarefyFilter | Source code |
| removeGroupsWithMissingValues | Man page Source code |
| selectGroups | Man page Source code |
| selectSamplesGivenMetadata | Man page Source code |
| seqPCoA | Man page Source code |
| seqgroup | Man page |
| setNAToGroupMean | Man page Source code |
| sheldon | Source code |
| silhouette | Man page Source code |
| sortSamples | Man page Source code |
| sortTaxa | Source code |
| tableMatcher | Source code |
| toPhyloseq | Man page Source code |
| transitionProbabs | Man page Source code |
